Hello! 👋

I'm a bioinformatician working on microbial (meta)genomics :DNA:

🤖 I like tinkering with nextflow:

• Metagenomics cleanup pipeline
• Get Illumina Reads

:package: Some tools are available via Bioconda :

| :dna: 🚀 seqfu | ⛰️ bamtocov | 🖌️ dadaist2 | 🛠️ qax | |:------------|:-------------|:------------|:-------------| | Fast toolkit for FASTX manipulation and inspection | to extract coverage tracks from BAM files | to analyze 16s/ITS from reads to R | utilities for Qiime2 artifacts |

:book: I use GitHub also for training material

| 📓 microbiome bioinformatics | 🧔 Personal website | 💻 bash training | 🎥 Companion videos |:--|:---|:---|:----| | Some tutorials | A small blog | Toy files to practice Bash | A Youtube channel

I'm using Mastodon