Hello! My name is Jean-Paul R. Soucy and I am a PhD candidate in infectious disease epidemiology at the Dalla Lana School of Public Health at the University of Toronto. My research interests focus on the use of emerging data sources in infectious disease surveillance.
Connect with me on Twitter. Find my personal website at jprs.me and my writing at Data Gripes. Code related to my blog can be found in the data-gripes repository.
archivist: Python-based digital archive tool currently powering the Canadian COVID-19 Data Archive
getDDD: Download defined daily dose (DDD) information for selected ATC codes from the website of the WHO Collaborating Centre for Drug Statistics Methodology
Reproducible research
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Wherever possible, I aim to publish reproducible research with open data:
covid-19-mobility: Public transit mobility as a leading indicator of COVID-19 transmission in 40 cities during the first wave of the pandemic
covid-19-antibiotic: Antibiotic prescribing in patients with COVID-19: A rapid review and meta-analysis
ccodwg-scientific-data: A sub-national real-time epidemiological and vaccination database for the COVID-19 pandemic in Canada
covid-19-coinfection-metaregression: Predictors and Microbiology of Co-Infection in Patients with COVID-19: Living Rapid Review Update and Meta-Regression
california-counties-suicide-and-temperature: The Effect of Average Temperature on Suicide Rates in Five Urban California Counties, 1999–2019: An Ecological Time Series Analysis