About me

Hi 👋, I'm Daniel, a Computational Biologist at the Interdisciplinary Research Unit Mathematics and Life Sciences / Life & Medical Sciences Institute at the University of Bonn. I am mostly active in dynamical modeling and parameter estimation. My papers are listed on Google Scholar.

I am developer / regular contributor / maintainer of a number of tools around efficient simulation and parameter estimation for dynamic models in systems biology. The main projects are:

• PEtab for specifying parameter estimation problems in systems biology in an efficient and interoperable manner
• AMICI for scalable simulation and sensitivity analysis (Python / C++ (/ Matlab))
• pypesto for parameter estimation in Python
• parPE for parameter estimation for ordinary differential equation models on high-performance computing cluster (C++)

Other projects in rather early stage:

• sbmlmath for interconverting SBML math and SymPy expressions
• An IntelliJ Antimony language support plugin for working with Antimony models in IntelliJ IDEs such as pycharm

📫 How to reach me

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