Hi there 👋
My name is Clémence Frioux, welcome!
- 👩💻 I am a researcher in computational biology
- 📍 I work at Inria, a French research Institute on computer science and mathematics. I am located in Bordeaux, France
- 🧬 🦠 I am interested in the (functional) characterisation of microbial communities. I mostly work on metabolic modelling 🦠, but I also work on microbiome composition and metagenomics 🧬
- 😄 Pronouns: She/Her
- ➡️ More info on my website: [https://cfrioux.github.io]
A few projects hosted here on Github that I want to highlight
I was not a developer in all of those projects but participated to them.
🧬 Mapler
Evaluation of assembly and binning quality for Hi-Fi metagenomics.
🧬 cvaNMF
A package for non-negative factorisation and its bi-cross validation.
🦠 Metage2Metabo
Pipeline dedicated to the (optional) automatic reconstruction of genome-scale metabolic network and characterising the metabolic potential and metabolic complementarity in microbial communities.
🦠 Metage2Metabo-postAViz
Shiny-based interface to integrate results of Metage2Metabo together with sample and taxonomic metadata, in order to compare metabolic potential across large cohorts of samples.
🦠 MeneTools
Several tools relying on network expansion to explore metabolic networks.
🦠 MiSCoTo
Selection of minimal communities ensuring the reachability of target metabolites, using a collection of metabolic networks
🦠 Seed2LP
Inference of seeds (environmental composition) from metabolic networks, using network expansion and flux balance analysis. Can be used for individual populations and microbial communities.
🦠 Meneco
Gap-filling of metabolic networks.
🦠 AuCoMe
Automatic reconstruction and comparison of metabolic networks.
🦠 mpwt
Python wrapper for Pathway Tools (reconstruction of metabolic networks).