Hi there 👋

You may also see my website – abolfazlarab.com

Manuscripts:

• GilbertLabUCSF/DDRi-screens | Functional genomics screens of DNA Damage Response inhibitors ... 🚧
• GilbertLabUCSF/Decitabine-treatment | Multi-Omics study of DNA hypomethylation
• GilbertLabUCSF/CanDI | Cancer Data Integrator

Functional-Genomics and Chemical-Genetics projects:

• ezformer | Run enformer like models, get prediction tracks, and perform benchmarking ... 🚧
• pyCCG | python toolbox for Computational Chemical Genomics (CCG) research projects ... 🚧
• FunGI-cap | Functional Genomics Screening Datasets, Tools, and Resources ... 🚧
• Cancer-Cell-Encoder | (ARCHIVED)
• ArcInstitute/ScreenPro2 | Flexible analysis of high-content CRISPR screening

Bulk and single-cell Multi-Omics tools

• RNAMultiOmics | A multi-omics analytic framework to study RNA dynamics ... 🚧
• scez | Single Cell Analysis, Easy Mode! ... 🚧
• MultiOmics | A multi-omics analytic framework to study RNA dynamics
• pager | PAGE algorithm run and downstream analysis
• sc-haircut-net | M.Sc. thesis project!
• RNAseq-tutorials, goodarzilab/WES, QuantSeq-FWD-with-UMIs, imRIP, HERVs

Projects at Harvard Medical School - DBMI and Zitnik Lab:

• UDNBioSimilarity | Investigating Biological Similarities among Rare Diseases (not public!)
• mims-harvard/TDC | Artificial intelligence foundation for therapeutic science
• mims-harvard/PrimeKG | Precision Medicine Knowledge Graph (PrimeKG)