BiocPy

Installs all BiocPy packages. The package itself does not provide any functionality on its own. It provides an

• easier way to install all core packages
• an interface to access the base data representations or classes

Install

Package is published to PyPI

pip install biocpy

Usage

To import any of the data classes,

from biocpy.genomicranges import GenomicRanges
from biocpy.summarizedexperiment import SummarizedExperiment
from biocpy.singlecellexperiment import SingleCellExperiment 
from biocpy.multiassayexperiment import MultiAssayExperiment

gr = GenomicRange(...)
se = SummarizedExperiment(...)
sce = SingleCellExperiment(...)
mae = MultiAssayExperiment(...)

For more use cases, checkout the documentation.

Note

This project has been set up using PyScaffold 4.1.1. For details and usage information on PyScaffold see https://pyscaffold.org/.